Package: bootnet 1.6

Sacha Epskamp

bootnet: Bootstrap Methods for Various Network Estimation Routines

Bootstrap methods to assess accuracy and stability of estimated network structures and centrality indices <doi:10.3758/s13428-017-0862-1>. Allows for flexible specification of any undirected network estimation procedure in R, and offers default sets for various estimation routines.

Authors:Sacha Epskamp [aut, cre], Eiko I. Fried [ctb]

bootnet_1.6.tar.gz
bootnet_1.6.zip(r-4.5)bootnet_1.6.zip(r-4.4)bootnet_1.6.zip(r-4.3)
bootnet_1.6.tgz(r-4.4-any)bootnet_1.6.tgz(r-4.3-any)
bootnet_1.6.tar.gz(r-4.5-noble)bootnet_1.6.tar.gz(r-4.4-noble)
bootnet_1.6.tgz(r-4.4-emscripten)bootnet_1.6.tgz(r-4.3-emscripten)
bootnet.pdf |bootnet.html✨
bootnet/json (API)
NEWS

# Install 'bootnet' in R:

install.packages('bootnet', repos = c('https://sachaepskamp.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/sachaepskamp/bootnet/issues

On CRAN:

31 exports 30 stars 5.83 score 163 dependencies 2 dependents 69 mentions 123 scripts 2.6k downloads

Last updated 3 months agofrom:9df9eabf00. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 18 2024
R-4.5-win	OK	Sep 18 2024
R-4.5-linux	OK	Sep 18 2024
R-4.4-win	OK	Sep 18 2024
R-4.4-mac	OK	Sep 18 2024
R-4.3-win	OK	Sep 18 2024
R-4.3-mac	OK	Sep 18 2024

Exports:binarize bootInclude bootnet bootnet_adalasso bootnet_cor bootnet_EBICglasso bootnet_ggmModSelect bootnet_graphicalVAR bootnet_huge bootnet_IsingFit bootnet_IsingSampler bootnet_LoGo bootnet_mgm bootnet_pcor bootnet_piecewiseIsing bootnet_relimp bootnet_SVAR_lavaan bootnet_TMFG bootThreshold corStability differenceTest estimateNetwork genGGM ggmGenerator IsingGenerator multiverse netSimulator null quantile_transformation rank_transformation replicationSimulator

Dependencies:abind backports base64enc bit bit64 boot broom bslib cachem candisc car carData checkmate class cli clipr cluster cocor codetools colorspace corpcor corrplot cowplot cpp11 crayon data.table Deriv digest doBy doParallel dplyr e1071 eigenmodel ellipse evaluate fansi farver fastmap fdrtool fontawesome forcats foreach foreign Formula fs gdata generics ggplot2 glasso glmnet glue GPArotation gridExtra gtable gtools haven heplots highr Hmisc hms htmlTable htmltools htmlwidgets igraph IsingFit IsingSampler isoband iterators jomo jpeg jquerylib jsonlite knitr labeling lattice lavaan lifecycle lme4 magrittr MASS Matrix MatrixModels memoise mgcv mgm mice microbenchmark mime minqa mitml mnormt modelr munsell mvtnorm NetworkToolbox networktools nlme nloptr nnet nnls numDeriv ordinal pan pbapply pbivnorm pbkrtest pillar pkgconfig plotrix plyr png polynom ppcor prettyunits progress proxy psych purrr pwr qgraph quadprog quantreg R.matlab R.methodsS3 R.oo R.utils R6 rappdirs RColorBrewer Rcpp RcppEigen readr reshape2 rgl rlang rmarkdown rpart rstudioapi sass scales shape smacof snow SparseM stringi stringr survival tibble tidyr tidyselect tinytex tzdb ucminf utf8 vctrs viridis viridisLite vroom weights withr wordcloud xfun yaml

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Bootstrap Methods for Various Network Estimation Routines	bootnet-package
Binarizes a dataset	binarize
Inclusion proportion graph	bootInclude
Bootstrapped network estimation	bootnet
Threshold network based on bootstrapped intervals	bootThreshold
Correlation stability coefficient	corStability
Bootstrapped difference test	differenceTest
Estimate a network structure	bootnet_adalasso bootnet_cor bootnet_EBICglasso bootnet_ggmModSelect bootnet_GGMncv bootnet_graphicalVAR bootnet_huge bootnet_IsingFit bootnet_IsingSampler bootnet_LoGo bootnet_mgm bootnet_pcor bootnet_piecewiseIsing bootnet_relimp bootnet_SVAR_lavaan bootnet_TMFG estimateNetwork
Generates a GGM small-world network.	genGGM
Generates a function that simulates data from the Gaussian graphical model (GGM)	ggmGenerator
Generates a function that simulates data from the Ising model	IsingGenerator
Multiverse plot of bootnet results	multiverse
Network Estimation Performance	netSimulator replicationSimulator
netSimulator S3 methods	plot.netSimulator plot.replicationSimulator print.netSimulator print.replicationSimulator summary.netSimulator summary.replicationSimulator
Returns NULL	null
Plots bootnet results	plot.bootnet
Plot method for bootnetResult objects	plot.bootnetResult
Print method for bootnet and bootnetResult objects	print.bootnet print.bootnetResult summary.bootnetResult
Summarize bootnet results	summary.bootnet
Data transformation functions	quantile_transformation rank_transformation