Package: qgraph 1.9.8

Sacha Epskamp

qgraph: Graph Plotting Methods, Psychometric Data Visualization and Graphical Model Estimation

Fork of qgraph - Weighted network visualization and analysis, as well as Gaussian graphical model computation. See Epskamp et al. (2012) <doi:10.18637/jss.v048.i04>.

Authors:Sacha Epskamp [aut, cre], Giulio Costantini [aut], Jonas Haslbeck [aut], Adela Isvoranu [aut], Angelique O. J. Cramer [ctb], Lourens J. Waldorp [ctb], Verena D. Schmittmann [ctb], Denny Borsboom [ctb]

qgraph_1.9.8.tar.gz
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qgraph.pdf |qgraph.html✨
qgraph/json (API)
NEWS

# Install 'qgraph' in R:

install.packages('qgraph', repos = c('https://sachaepskamp.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/sachaepskamp/qgraph/issues

Uses libs:

c++– GNU Standard C++ Library v3

Datasets:

big5 - Big 5 dataset
big5groups - Big 5 groups list

On CRAN:

11.33 score 68 stars 58 packages 1.1k scripts 21k downloads 222 mentions 31 exports 85 dependencies

Last updated 1 years agofrom:9b70cd438e. Checks:OK: 9. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 07 2024
R-4.5-win-x86_64	OK	Nov 07 2024
R-4.5-linux-x86_64	OK	Nov 07 2024
R-4.4-win-x86_64	OK	Nov 07 2024
R-4.4-mac-x86_64	OK	Nov 07 2024
R-4.4-mac-aarch64	OK	Nov 07 2024
R-4.3-win-x86_64	OK	Nov 07 2024
R-4.3-mac-x86_64	OK	Nov 07 2024
R-4.3-mac-aarch64	OK	Nov 07 2024

Exports:averageLayout centrality centrality_auto centralityPlot centralityTable clustcoef_auto clusteringPlot clusteringTable clustOnnela clustWS clustZhang cor_auto EBICglasso FDRnetwork flow getWmat ggmFit ggmModSelect makeBW mat2vec mutualInformation pathways qgraph qgraph.animate qgraph.layout.fruchtermanreingold qgraph.loadings qgraphMixed smallworldIndex smallworldness VARglm wi2net

Dependencies:abind backports base64enc bslib cachem checkmate cli cluster colorspace corpcor cpp11 data.table digest evaluate fansi farver fastmap fdrtool fontawesome foreign Formula fs ggplot2 glasso glue GPArotation gridExtra gtable gtools highr Hmisc htmlTable htmltools htmlwidgets igraph isoband jpeg jquerylib jsonlite knitr labeling lattice lavaan lifecycle magrittr MASS Matrix memoise mgcv mime mnormt munsell nlme nnet numDeriv pbapply pbivnorm pillar pkgconfig plyr png psych quadprog R6 rappdirs RColorBrewer Rcpp reshape2 rlang rmarkdown rpart rstudioapi sass scales stringi stringr tibble tinytex utf8 vctrs viridis viridisLite withr xfun yaml

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Converts qgraph object to igraph object.	as.igraph.qgraph
Computes an average layout over several graphs	averageLayout
Big 5 dataset	big5
Big 5 groups list	big5groups
Centrality statistics of graphs	centrality
Centrality and Clustering plots and tables	centralityPlot centralityTable clusteringPlot clusteringTable
Automatic centrality statistics of graphs	centrality_auto
Local clustering coefficients.	clustcoef_auto clustOnnela clustWS clustZhang
Automatically compute an apppropriate correlation matrix	cor_auto
Compute Gaussian graphical model using graphical lasso based on extended BIC criterium.	EBICglasso
Model selection using local False Discovery Rate	FDRnetwork
Draws network as a flow diagram showing how one node is connected to all other nodes	flow
Obtain a weights matrix	getWmat getWmat.data.frame getWmat.igraph getWmat.matrix getWmat.qgraph
Obtain fit measures of a Gaussian graphical model	ggmFit
Unregularized GGM model search	ggmModSelect
A qgraph plot can be understood in black and white	makeBW
Weights matrix to vector	mat2vec
Computes the mutual information between nodes	mutualInformation
Highlight shortest pathways in a network	pathways
Plot method for "qgraph"	plot.qgraph
Print edgelist	print.qgraph
qgraph	qgraph
Animate a growing network	qgraph.animate
qgraph.layout.fruchtermanreingold	qgraph.layout.fruchtermanreingold
qgraph.loadings	qgraph.loadings
Plots a mixed graph with both directed and undirected edges.	qgraphMixed
Small-world index of unweighted graph	smallworldIndex
Compute the small-worldness index.	smallworldness
Summary method for "qgraph"	summary.qgraph
Computes a vector autoregressive lag-1 model using GLM	VARglm
Converts precision matrix to partial correlation matrix	wi2net