Package: psychonetrics 0.13

Sacha Epskamp

psychonetrics: Structural Equation Modeling and Confirmatory Network Analysis

Multi-group (dynamical) structural equation models in combination with confirmatory network models from cross-sectional, time-series and panel data <doi:10.31234/osf.io/8ha93>. Allows for confirmatory testing and fit as well as exploratory model search.

Authors:Sacha Epskamp

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psychonetrics.pdf |psychonetrics.html✨
psychonetrics/json (API)
NEWS

# Install 'psychonetrics' in R:

install.packages('psychonetrics', repos = c('https://sachaepskamp.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/sachaepskamp/psychonetrics/issues

Uses libs:

openblas– Optimized BLAS
c++– GNU Standard C++ Library v3

Datasets:

Jonas - Jonas dataset
StarWars - Star Wars dataset

On CRAN:

81 exports 41 stars 3.23 score 109 dependencies 3 mentions 31 scripts 615 downloads

Last updated 2 months agofrom:7b402ccc9e. Checks:OK: 9. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Aug 22 2024
R-4.5-win-x86_64	OK	Aug 22 2024
R-4.5-linux-x86_64	OK	Aug 22 2024
R-4.4-win-x86_64	OK	Aug 22 2024
R-4.4-mac-x86_64	OK	Aug 22 2024
R-4.4-mac-aarch64	OK	Aug 22 2024
R-4.3-win-x86_64	OK	Aug 22 2024
R-4.3-mac-x86_64	OK	Aug 22 2024
R-4.3-mac-aarch64	OK	Aug 22 2024

Exports:addfit addMIs addSEs aggregate_bootstraps bifactor bootstrap changedata checkFisher checkJacobian cholesky CIplot compare corr covML covMLtoUB covUBtoML diagonalizationMatrix dlvm1 duplicationMatrix eliminationMatrix emergencystart esa esa_manual factorscores fit fixpar fixstart freepar generate getmatrix getVCOV ggm groupequal groupfree gvar identify intersectionmodel Ising latentgrowth lnm logbook lrnm lvm meta_ggm meta_varcov MIs ml_gvar ml_lnm ml_lrnm ml_lvm ml_rnm ml_ts_lvgvar ml_tsdlvm1 ml_var modelsearch panel_lvgvar panelgvar panelvar parameters parequal partialprune prec precision prune resid residuals rnm runmodel setestimator setoptimizer setverbose show simplestructure stepup transmod ts_lvgvar tsdlvm1 unionmodel usecpp var1 varcov

Dependencies:abind backports base64enc boot bslib cachem checkmate cli cluster codetools colorspace combinat corpcor cpp11 crayon data.table digest dplyr evaluate fansi farver fastmap fdrtool fontawesome foreach foreign Formula fs GA generics ggplot2 glasso glue GPArotation gridExtra gtable gtools highr Hmisc htmlTable htmltools htmlwidgets igraph IsingSampler isoband iterators jpeg jquerylib jsonlite knitr labeling lattice lavaan lifecycle lme4 magrittr MASS Matrix memoise mgcv mime minqa mnormt munsell nlme nloptr nnet numDeriv optimx pbapply pbivnorm pbv pillar pkgconfig plyr png pracma psych purrr qgraph quadprog R6 rappdirs RColorBrewer Rcpp RcppArmadillo RcppEigen reshape2 rlang rmarkdown roptim rpart rstudioapi sass scales stringi stringr tibble tidyr tidyselect tinytex utf8 VCA vctrs viridis viridisLite withr xfun yaml

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Structural Equation Modeling and Confirmatory Network Analysis	psychonetrics-package psychonetrics
Aggregate Bootstrapped Models	aggregate_bootstraps
Bi-factor models	bifactor
Bootstrap a psychonetrics model	bootstrap
Change the data of a psychonetrics object	changedata
Plot Analytic Confidence Intervals	CIplot
Model comparison	compare print.psychonetrics_compare
Maximum likelihood covariance estimate	covML covMLtoUB covUBtoML
Diagnostic functions	checkFisher checkJacobian
Lag-1 dynamic latent variable model family of psychonetrics models for panel data	dlvm1 panelgvar panelvar panel_lvgvar
Model matrices used in derivatives	diagonalizationMatrix duplicationMatrix eliminationMatrix
Reset starting values to simple defaults	emergencystart
Ergodic Subspace Analysis	esa esa_manual plot.esa plot.esa_manual print.esa print.esa_manual
Compute factor scores	factorscores
Print fit indices	fit
Parameters modification	fixpar freepar
Attempt to Fix Starting Values	fixstart
Generate data from a fitted psychonetrics object	generate
Extract an estimated matrix	getmatrix
Obtain the asymptotic covariance matrix	getVCOV
Group equality constrains	groupequal groupfree
Ising model	Ising
Jonas dataset	Jonas
Latnet growth curve model	latentgrowth
Retrieve the psychonetrics logbook	logbook
Continuous latent variable family of psychonetrics models	lnm lrnm lvm rnm
Variance-covariance and GGM meta analysis	meta_ggm meta_varcov
Print modification indices	MIs
Multi-level latent variable model family	ml_lnm ml_lrnm ml_lvm ml_rnm
Multi-level Lag-1 dynamic latent variable model family of psychonetrics models for time-series data	ml_gvar ml_tsdlvm1 ml_ts_lvgvar ml_var
Stepwise model search	modelsearch
Print parameter estimates	parameters
Set equality constrains across parameters	parequal
Partial pruning of multi-group models	partialprune
Stepdown model search by pruning non-significant parameters.	prune
Class '"psychonetrics_bootstrap"'	psychonetrics_bootstrap-class show,psychonetrics_bootstrap-method
Class '"psychonetrics"'	psychonetrics_log-class show,psychonetrics_log-method
Model updating functions	addfit addMIs addSEs identify
Class '"psychonetrics"'	psychonetrics-class resid,psychonetrics-method residuals,psychonetrics-method show,psychonetrics-method
Run a psychonetrics model	runmodel
Convenience functions	setestimator setoptimizer usecpp
Should messages of computation progress be printed?	setverbose
Generate factor loadings matrix with simple structure	simplestructure
Star Wars dataset	StarWars
Stepup model search along modification indices	stepup
Transform between model types	transmod
Lag-1 dynamic latent variable model family of psychonetrics models for time-series data	tsdlvm1 ts_lvgvar
Unify models across groups	intersectionmodel unionmodel
Lag-1 vector autoregression family of psychonetrics models	gvar var1
Variance-covariance family of psychonetrics models	cholesky corr ggm prec precision varcov